Volume 3; Issue 4 Suppleme

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BMC Proceedings
Volume 3; Issue 4 Suppleme

BMC Proceedings

Volume 3; Issue 4 Suppleme

1

Globaltest and GOEAST: two different approaches for Gene Ontology analysis

Hulsegge, Ina, Kommadath, Arun, Smits, Mari A

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 236 KB

english, 2009

2

IMAD: flexible annotation of microarray sequences

Prickett, Dennis, Watson, Michael

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 83 KB

english, 2009

3

sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters

Casel, Pierrot, Moreews, François, Lagarrigue, Sandrine, Klopp, Christophe

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 112 KB

english, 2009

4

Predicting qualitative phenotypes from microarray data – the Eadgene pig data set

Robert-Granié, Christèle, Lê Cao, Kim-Anh, SanCristobal, Magali

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 130 KB

english, 2009

5

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

Hedegaard, Jakob, Arce, Cristina, Bicciato, Silvio, Bonnet, Agnès, Buitenhuis, Bart, Collado-Romero, Melania, Conley, Lene N, SanCristobal, Magali, Ferrari, Francesco, Garrido, Juan J, Groenen, Martie

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 119 KB

english, 2009

6

Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares

Bonnet, Agnès, Lagarrigue, Sandrine, Liaubet, Laurence, Robert-Granié, Christèle, SanCristobal, Magali, Tosser-Klopp, Gwenola

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 162 KB

english, 2009

7

Gene network reconstruction from microarray data

Jaffrezic, Florence, Tosser-Klopp, Gwenola

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 115 KB

english, 2009

8

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs

Jouffe, Vincent, Rowe, Suzanne, Liaubet, Laurence, Buitenhuis, Bart, Hornshøj, Henrik, SanCristobal, Magali, Mormède, Pierre, de Koning, DJ

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 189 KB

english, 2009

9

Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis

Jiménez-Marín, Ángeles, Collado-Romero, Melania, Ramirez-Boo, María, Arce, Cristina, Garrido, Juan J

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 136 KB

english, 2009

10

Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasiteEimeria

Prickett, Dennis, Watson, Michael

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 96 KB

english, 2009

11

Gene set analysis methods applied to chicken microarray expression data

Skarman, Axel, Jiang, Li, Henrik, Hornshøj, Buitenhuis, Bart, Hedegaard, Jakob, Conley, Lene N, Sørensen, Peter

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 141 KB

english, 2009

12

OligoRAP – an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity

Neerincx, Pieter BT, Rauwerda, Han, Nie, Haisheng, Groenen, Martien AM, Breit, Timo M, Leunissen, Jack AM

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 145 KB

english, 2009

13

Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis

Neerincx, Pieter BT, Casel, Pierrot, Prickett, Dennis, Nie, Haisheng, Watson, Michael, Leunissen, Jack AM, Groenen, Martien AM, Klopp, Christophe

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 466 KB

english, 2009

14

Microarray data mining using Bioconductor packages

Nie, Haisheng, Neerincx, Pieter BT, Poel, Jan, Ferrari, Francesco, Bicciato, Silvio, Leunissen, Jack AM, Groenen, Martien AM

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 147 KB

english, 2009

15

The EADGENE and SABRE post-analyses workshop

Jaffrezic, Florence, Hedegaard, Jakob, SanCristobal, Magali, Klopp, Christophe, de Koning, Dirk-Jan

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 223 KB

english, 2009